{ "_id": "6a1e96ba1d7bb097a0a6c8d9", "Package": "BayesianMediationA", "Type": "Package", "Title": "Bayesian Mediation Analysis", "Version": "1.0.1", "Date": "2022-09-26", "Authors@R": "c(person(\"Qingzhao\", \"Yu\", role = c(\"aut\", \"cre\", \"cph\"),\nemail = \"qyu@lsuhsc.edu\"),\nperson(\"Bin\", \"Li\", role = \"aut\"))", "Author": "Qingzhao Yu [aut, cre, cph], Bin Li [aut]", "Maintainer": "Qingzhao Yu ", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Description": "We perform general mediation analysis in the Bayesian\nsetting using the methods described in Yu and Li (2022,\nISBN:9780367365479). With the package, the mediation analysis\ncan be performed on different types of outcomes (e.g.,\ncontinuous, binary, categorical, or time-to-event), with\ndefault or user-defined priors and predictive models. The\nBayesian estimates and credible sets of mediation effects are\nreported as analytic results.", "License": "GPL (>= 2)", "URL": "https://cran.r-project.org/package=BayesianMediationA,\nhttps://publichealth.lsuhsc.edu/Faculty_pages/qyu/index.html", "RoxygenNote": "7.2.1", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-02 08:32:51 UTC", "User": "root" }, "Config/pak/sysreqs": "cmake make jags libicu-dev", "Repository": "https://qingzhaoyu.r-universe.dev", "Date/Publication": "2022-09-24 22:40:02 UTC", "RemoteUrl": "https://github.com/cran/BayesianMediationA", "RemoteRef": "HEAD", "RemoteSha": "30a4a0cde8ea0e2567edc1d17936649d92cd882c", "MD5sum": "168dad46f0cf8aa73067e0241c404c99", "_user": "qingzhaoyu", "_type": "src", "_file": "BayesianMediationA_1.0.1.tar.gz", "_fileid": "f52a6c676f1b402d99434fb332fbc599b446bacb8b7be2fe766c30f420841de2", "_filesize": 845684, "_sha256": "f52a6c676f1b402d99434fb332fbc599b446bacb8b7be2fe766c30f420841de2", "_created": "2026-06-02T08:32:51.000Z", "_published": "2026-06-02T08:39:22.303Z", "_distro": "noble", "_jobs": [ { "job": 79031081308, "time": 195, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7352858668" }, { "job": 79031081280, "time": 146, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7352841824" }, { "job": 79031081330, "time": 110, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7352857108" }, { "job": 79031081279, "time": 190, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7352907262" }, { "job": 79030362741, "time": 248, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7352792155" }, { "job": 79031081388, "time": 122, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7352834072" }, { "job": 79031081307, "time": 183, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7352854365" }, { "job": 79031081298, "time": 122, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7352832117" }, { "job": 79031081288, "time": 115, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7352832172" } ], "_buildurl": "https://github.com/r-universe/qingzhaoyu/actions/runs/26807988052", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/BayesianMediationA", "_commit": { "id": "30a4a0cde8ea0e2567edc1d17936649d92cd882c", "author": "Qingzhao Yu ", "committer": "cran-robot ", "message": "version 1.0.1\n", "time": 1664059202 }, "_maintainer": { "name": "Qingzhao Yu", "email": "qyu@lsuhsc.edu", "login": "qingzhaoyu", "description": "Professor of Biostatistics", "uuid": 14879978 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.14.1", "role": "Depends" }, { "package": "survival", "role": "Depends" }, { "package": "R2jags", "role": "Depends" }, { "package": "car", "role": "Depends" }, { "package": "gplots", "role": "Depends" }, { "package": "lattice", "role": "Depends" }, { "package": "splines", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "qingzhaoyu", "count": 2, "uuid": 14879978 } ], "_userbio": { "uuid": 14879978, "type": "user", "name": "Qingzhao Yu", "description": "Professor of Biostatistics" }, "_downloads": { "count": 185, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BayesianMediationA" }, "_searchresults": 2, "_topics": [ "jags", "cpp" ], "_rbuild": "4.6.0", "_assets": [ "extra/BayesianMediationA.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "manual.pdf" ], "_realowner": "qingzhaoyu", "_cranurl": false, "_releases": [ { "version": "1.0", "date": "2022-08-18" }, { "version": "1.0.1", "date": "2022-09-25" } ], "_exports": [ "bma.bx.cy", "data_org", "print.summary.bma", "summary.bma.bx.cy" ], "_datasets": [ { "name": "weight_behavior", "title": "Weight_Behavior Data Set", "object": "weight_behavior", "file": "weight_behavior.rda", "class": [ "data.frame" ], "fields": [ "bmi", "age", "sex", "race", "numpeople", "car", "gotosch", "snack", "tvhours", "cmpthours", "cellhours", "sports", "exercises", "sweat", "overweigh" ], "rows": 691, "table": true, "tojson": true } ], "_help": [ { "page": "BayesianMediationA-package", "title": "Bayesian Mediation Analysis Package", "topics": [ "BayesianMediationA-package", "BayesianMediationA" ] }, { "page": "bma.bx.cy", "title": "Bayesian Mediation Analysis", "topics": [ "bma.bx.cy" ] }, { "page": "data_org", "title": "Data Organization", "topics": [ "data_org" ] }, { "page": "print.summary.bma", "title": "Print the results from the summary function.", "topics": [ "print.summary.bma" ] }, { "page": "summary.bma.bx.cy", "title": "Summary function for the bma.bx.cy object", "topics": [ "summary.bma.bx.cy" ] }, { "page": "weight_behavior", "title": "Weight_Behavior Data Set", "topics": [ "weight_behavior" ] } ], "_rundeps": [ "abind", "backports", "bitops", "boot", "broom", "car", "carData", "caTools", "cli", "coda", "colorspace", "cowplot", "cpp11", "Deriv", "doBy", "dplyr", "farver", "forecast", "Formula", "fracdiff", "generics", "ggplot2", "glue", "gplots", "gtable", "gtools", "isoband", "KernSmooth", "labeling", "lattice", "lifecycle", "lme4", "lmtest", "magrittr", "MASS", "Matrix", "MatrixModels", "mgcv", "microbenchmark", "minqa", "modelr", "nlme", "nloptr", "nnet", "numDeriv", "pbkrtest", "pillar", "pkgconfig", "purrr", "quantreg", "R2jags", "R2WinBUGS", "R6", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "Rdpack", "reformulas", "rjags", "rlang", "S7", "scales", "SparseM", "stringi", "stringr", "survival", "tibble", "tidyr", "tidyselect", "timeDate", "urca", "utf8", "vctrs", "viridisLite", "withr", "zoo" ], "_sysdeps": [ { "shlib": "libjags", "package": "jags", "headers": "jags", "source": "jags", "version": "4.3.2-2.2404.0", "name": "jags", "homepage": "https://mcmc-jags.sourceforge.io", "description": "Just Another Gibbs Sampler for Bayesian MCMC - binary\nJAGS is Just Another Gibbs Sampler. It is a program for analysis of\nBayesian hierarchical models using Markov Chain Monte Carlo (MCMC)\nsimulation not wholly unlike BUGS.\n\nJAGS was written with three aims in mind:\n* To have an engine for the BUGS language that runs on Unix\n* To be extensible, allowing users to write their own functions,\ndistributions and samplers.\n* To be a plaftorm for experimentation with ideas in Bayesian modelling\n\nThis package contains the 'jags' binary as well as the associated\nshared library modules loaded by the binary." }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "BayesianMediationAvignette.Rmd", "filename": "BayesianMediationAvignette.html", "title": "Examples for Bayesian Mediation Analysis", "author": "Qingzhao Yu and Bin Li", "engine": "knitr::rmarkdown", "headings": [ "Package installation", "The Data Set", "Data Transformation and Organization", "The function $bma.bx.cy$ for Bayesian mediation analysis", "Categorical predictor", "use transfered continuous predictors for y", "Binary outcome", "Time-to-Event outcome", "Categorical outcome", "References" ], "created": "2022-09-24 22:40:02", "modified": "2022-09-24 22:40:02", "commits": 1 } ], "_score": 2, "_indexed": true, "_nocasepkg": "bayesianmediationa", "_universes": [ "qingzhaoyu" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.1", "date": "2026-06-02T08:35:47.000Z", "distro": "noble", "commit": "30a4a0cde8ea0e2567edc1d17936649d92cd882c", "fileid": "c89104bdcf53c99978655522fa6513be6852ca6ca4a811e143720b7d2c75ad2a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/qingzhaoyu/actions/runs/26807988052" }, { "r": "4.6.0", "os": "linux", "version": "1.0.1", "date": "2026-06-02T08:35:08.000Z", "distro": "noble", "commit": "30a4a0cde8ea0e2567edc1d17936649d92cd882c", "fileid": "f4174415b9591dd01add62056be100d68d1c8f8dbfacf7729776c291e9683fac", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/qingzhaoyu/actions/runs/26807988052" }, { "r": "4.5.3", "os": "mac", "version": "1.0.1", "date": "2026-06-02T08:36:00.000Z", "commit": "30a4a0cde8ea0e2567edc1d17936649d92cd882c", "fileid": "ba768449f38280131f79acd43196922445e9db344cf87a7fd61867b049c88a4d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/qingzhaoyu/actions/runs/26807988052" }, { "r": "4.6.0", "os": "mac", "version": "1.0.1", "date": "2026-06-02T08:37:59.000Z", "commit": "30a4a0cde8ea0e2567edc1d17936649d92cd882c", "fileid": "a166c3bdab85ec831163aa00fdc3de2b23bcffb5cba4ddc7fe6d333d1aef731e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/qingzhaoyu/actions/runs/26807988052" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.1", "date": "2026-06-02T08:35:18.000Z", "commit": "30a4a0cde8ea0e2567edc1d17936649d92cd882c", "fileid": "d14ddffc65b2c58d4d78062ee236f494421bc4b7efeb01927a6fb2f1a19b8acb", "status": "success", "buildurl": "https://github.com/r-universe/qingzhaoyu/actions/runs/26807988052" }, { "r": "4.7.0", "os": "win", "version": "1.0.1", "date": "2026-06-02T08:35:18.000Z", "commit": "30a4a0cde8ea0e2567edc1d17936649d92cd882c", "fileid": "e1d270682c6460b5a02a86857ac66de8580858c4c33616d76faf86d23763017d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/qingzhaoyu/actions/runs/26807988052" }, { "r": "4.5.3", "os": "win", "version": "1.0.1", "date": "2026-06-02T08:34:25.000Z", "commit": "30a4a0cde8ea0e2567edc1d17936649d92cd882c", "fileid": "10e8af1cadd7961cddee52948dd5b1ae6d64d31043f70474ea7e7b1cf7862085", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/qingzhaoyu/actions/runs/26807988052" }, { "r": "4.6.0", "os": "win", "version": "1.0.1", "date": "2026-06-02T08:34:22.000Z", "commit": "30a4a0cde8ea0e2567edc1d17936649d92cd882c", "fileid": "2d88ba67b3438713db04dab62f0f4294f829a365059de6d0dd03f8b4c7bd896d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/qingzhaoyu/actions/runs/26807988052" } ] }